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DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.

Multi-omics data are good resources for prognosis and survival prediction; however, these are difficult to integrate computationally. We introduce DeepProg, a novel ensemble framework of deep-learning and machine-learning approaches that robustly predicts patient survival subtypes using multi-omics data. It identifies two optimal survival subtypes in most cancers and yields significantly better risk-stratification than other multi-omics integration methods. DeepProg is highly predictive, exemplified by two liver cancer (C-index 0.73-0.80) and five breast cancer datasets (C-index 0.68-0.73). Pan-cancer analysis associates common genomic signatures in poor survival subtypes with extracellular matrix modeling, immune deregulation, and mitosis processes. DeepProg is freely available at https://github.com/lanagarmire/DeepProg.

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DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.

> 商业许可源文 · EUROPE_PMC · [CC-BY](https://creativecommons.org/licenses/by/)

书目信息

  • 引用：Poirion OB, Jing Z, Chaudhary K, Huang S, Garmire LX. (2021). DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data. Genome medicine. PMID 34261540 · PMC8281595 · DOI 10.1186/s13073-021-00930-x
  • 证据类型：PRIMARY_RESEARCH
  • 主题：multi-omics
  • 被引次数（采集时）：187
  • 原始记录：[Europe PMC](https://europepmc.org/article/MED/34261540)
  • 来源许可：[CC-BY](https://creativecommons.org/licenses/by/)

    • 作者摘要（按来源许可复用）

    Multi-omics data are good resources for prognosis and survival prediction; however, these are difficult to integrate computationally. We introduce DeepProg, a novel ensemble framework of deep-learning and machine-learning approaches that robustly predicts patient survival subtypes using multi-omics data. It identifies two optimal survival subtypes in most cancers and yields significantly better risk-stratification than other multi-omics integration methods. DeepProg is highly predictive, exemplified by two liver cancer (C-index 0.73-0.80) and five breast cancer datasets (C-index 0.68-0.73). Pan-cancer analysis associates common genomic signatures in poor survival subtypes with extracellular matrix modeling, immune deregulation, and mitosis processes. DeepProg is freely available at https://github.com/lanagarmire/DeepProg.

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    DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data. · GeniOmics