公开知识文档

Explainable multiview framework for dissecting spatial relationships from highly multiplexed data.

The advancement of highly multiplexed spatial technologies requires scalable methods that can leverage spatial information. We present MISTy, a flexible, scalable, and explainable machine learning framework for extracting relationships from any spatial omics data, from dozens to thousands of measured markers. MISTy builds multiple views focusing on different spatial or functional contexts to dissect different effects. We evaluated MISTy on in silico and breast cancer datasets measured by imaging mass cytometry and spatial transcriptomics. We estimated structural and functional interactions coming from different spatial contexts in breast cancer and demonstrated how to relate MISTy's results to clinical features.

Explainable multiview framework for dissecting spatial relationships from highly multiplexed data.

> 商业许可源文 · EUROPE_PMC · [CC-BY](https://creativecommons.org/licenses/by/)

书目信息

  • 引用:Tanevski J, Flores ROR, Gabor A, Schapiro D, Saez-Rodriguez J. (2022). Explainable multiview framework for dissecting spatial relationships from highly multiplexed data. Genome biology. PMID 35422018 · PMC9011939 · DOI 10.1186/s13059-022-02663-5
  • 证据类型:PRIMARY_RESEARCH
  • 主题:spatial-omics
  • 被引次数(采集时):171
  • 原始记录:[Europe PMC](https://europepmc.org/article/MED/35422018)
  • 来源许可:[CC-BY](https://creativecommons.org/licenses/by/)
  • 作者摘要(按来源许可复用)

    The advancement of highly multiplexed spatial technologies requires scalable methods that can leverage spatial information. We present MISTy, a flexible, scalable, and explainable machine learning framework for extracting relationships from any spatial omics data, from dozens to thousands of measured markers. MISTy builds multiple views focusing on different spatial or functional contexts to dissect different effects. We evaluated MISTy on in silico and breast cancer datasets measured by imaging mass cytometry and spatial transcriptomics. We estimated structural and functional interactions coming from different spatial contexts in breast cancer and demonstrated how to relate MISTy's results to clinical features.

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    Explainable multiview framework for dissecting spatial relationships from highly multiplexed data. · GeniOmics