Public knowledge document

Statistical and machine learning methods for spatially resolved transcriptomics data analysis.

The recent advancement in spatial transcriptomics technology has enabled multiplexed profiling of cellular transcriptomes and spatial locations. As the capacity and efficiency of the experimental technologies continue to improve, there is an emerging need for the development of analytical approaches. Furthermore, with the continuous evolution of sequencing protocols, the underlying assumptions of current analytical methods need to be re-evaluated and adjusted to harness the increasing data complexity. To motivate and aid future model development, we herein review the recent development of statistical and machine learning methods in spatial transcriptomics, summarize useful resources, and highlight the challenges and opportunities ahead.

Statistical and machine learning methods for spatially resolved transcriptomics data analysis.

> 商业许可源文 · EUROPE_PMC · [CC-BY](https://creativecommons.org/licenses/by/)

书目信息

  • 引用:Zeng Z, Li Y, Li Y, Luo Y. (2022). Statistical and machine learning methods for spatially resolved transcriptomics data analysis. Genome biology. PMID 35337374 · PMC8951701 · DOI 10.1186/s13059-022-02653-7
  • 证据类型:REVIEW
  • 主题:rna-seq、spatial-omics
  • 被引次数(采集时):139
  • 原始记录:[Europe PMC](https://europepmc.org/article/MED/35337374)
  • 来源许可:[CC-BY](https://creativecommons.org/licenses/by/)
  • 作者摘要(按来源许可复用)

    The recent advancement in spatial transcriptomics technology has enabled multiplexed profiling of cellular transcriptomes and spatial locations. As the capacity and efficiency of the experimental technologies continue to improve, there is an emerging need for the development of analytical approaches. Furthermore, with the continuous evolution of sequencing protocols, the underlying assumptions of current analytical methods need to be re-evaluated and adjusted to harness the increasing data complexity. To motivate and aid future model development, we herein review the recent development of statistical and machine learning methods in spatial transcriptomics, summarize useful resources, and highlight the challenges and opportunities ahead.

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    Statistical and machine learning methods for spatially resolved transcriptomics data analysis. · GeniOmics