Cloud-Native Omics Analysis Platform

Turn every sequencing dataset into a scientific asset

GeniOmics turns complex bioinformatics into a one-stop service — just upload a samplesheet and run. Powered by Nextflow and cloud-native elastic compute, nf-core standard pipelines, and a zero-code AI assistant.

Built on the Nextflow & nf-core open standardBy GeniSpace · Cloud-Native Omics

nextflow run · elastic executor

Open foundation

Built on proven open standards

GeniOmics productizes the Nextflow and nf-core ecosystem — you get the trust and transparency of open source, plus a platform that just works.

Nextflow

The leading workflow engine — reproducible runs across any cloud and HPC.

nf-core

A community-curated collection of rigorously validated best-practice pipelines.

MultiQC

Aggregates every QC result into one unified, interactive report.

Wave

Builds and caches container images on demand for consistent, faster startups.

Redefining analysis efficiency with cloud compute

Elastic, pay-as-you-go — turning the fixed cost of an on-prem cluster into a predictable variable cost.

60–90%

lower compute cost

Elastic instances first, scaling to zero when idle — far cheaper than a self-hosted cluster.

30–60

min per sample

Standard pipelines out of the box — a single RNA-seq sample completes in 30–60 minutes.

vCPU elastic peak

Scale to 256 vCPU for massive parallelism, then shrink automatically when done.

code required

An AI assistant plus a visual interface — researchers run analyses in plain language.

One platform

One platform across the entire sequencing data lifecycle

Pipelines, data, interactive analysis, AI, and elastic compute — unified in one platform, with reproducible, traceable results.

Pipelines

Develop, run, and monitor Nextflow pipelines — built-in nf-core standards plus custom builds and versioning.

FastQC

STAR

Salmon

MultiQC

Workflow

From samplesheet to report, fully automated

Upload a samplesheet, and the platform schedules a Nextflow head node, distributes each step as an independent cloud job, and writes results straight back to object storage.

Upload samples

FASTQ + samplesheet uploaded to object storage

Smart scheduling

Nextflow head node orchestrates and dispatches jobs

Elastic compute

Elastic instances run each step in parallel

Results archived

Counts & QC reports written to object storage, viewed online

Upload samples

FASTQ + samplesheet uploaded to object storage

Smart scheduling

Nextflow head node orchestrates and dispatches jobs

Elastic compute

Elastic instances run each step in parallel

Results archived

Counts & QC reports written to object storage, viewed online

AI assistant

Run a full analysis in one sentence

Describe what you need in plain language. The assistant picks the pipeline, fills parameters, validates the samplesheet and submits, with every step visible, interruptible and traceable.

Natural-language submit

Auto-fill and validation

Streaming progress

GeniOmics Assistant

Run rnaseq for me on the GRCh38 reference

create_samplesheet → validate → submit

Submitted rnaseq for 8 samples, estimated 18 Credits. Track progress live on the Jobs page.

Submitted

One platform, from samples to results

More than running pipelines. Customisation, collaboration, integration and reproducibility, all in one place.

Zero-code, fully visual

Parameters render from schema, samplesheets are built visually, and pipelines are assembled by drag-and-drop into generated Nextflow. No command line.

Visual parameter formsDrag-and-drop samplesheetAssemble to DSL2

Custom pipelines and tools

Bring any nf-core or your own Nextflow pipeline, or assemble tools into a new one.

Bring your own reference

Upload and manage your own reference sequences and annotations, then select them at submit time.

Teams and SSO

Organizations, roles and invitations, with GeniSpace single sign-on or standalone accounts.

Open API and webhooks

REST API, API keys and event webhooks to plug into scripts, CLI and CI pipelines.

Reproducible and auditable

Pinned pipeline versions plus recorded parameters and input fingerprints make every run reproducible and auditable.

Built on Nextflow

One engine, many surfaces

Cloud-native engineering baked into the product, so research teams can drive analysis any way they work.

Fusion file system

Direct object-storage access without mounting — high-performance data transfer.

Wave containers

Automatic container build and caching for faster job startup.

Elastic instances

Save 60–90% on compute, with automatic retry on interruption.

Elastic scaling

Scale to 256 vCPU on demand, shrink to zero when idle.

AI assistant

Manage pipelines in plain language — analysis with zero code.

nf-core standard

Community-validated best-practice pipelines with reproducible results.

Pipelines

Standardized pipelines across mainstream omics

Six nf-core community-validated best-practice pipelines, ready to run — plus the ability to build custom pipelines and tools.

nf-core/rnaseq

RNA-seq

Expression quantification

Multiple aligners and quantification methods, with comprehensive QC and gene / transcript-level quantification.

v3.14.0

nf-core/chipseq

ChIP-seq

Protein-DNA interaction

For protein-DNA interaction studies, including peak calling, annotation, and differential analysis.

v2.0.0

nf-core/atacseq

ATAC-seq

Chromatin accessibility

For chromatin accessibility studies, detecting open chromatin regions and regulatory elements.

v2.1.2

nf-core/sarek

Sarek variant calling

germline / somatic

Germline and somatic variant analysis for WGS / WES data, with functional annotation.

v3.4.0

nf-core/methylseq

Methyl-seq

DNA methylation

Whole-genome methylation analysis for WGBS and RRBS data.

v2.6.0

nf-core/spatialvi

Spatial transcriptomics

10x Visium

10x Genomics Visium spatial transcriptomics analysis with Space Ranger and downstream steps.

v1.0dev

Product tour

An analysis workbench built for research teams

From job submission to results, everything is visual — and an AI assistant makes every step intuitive.

app.geniomics.com/jobs

GeniOmics

Jobs

Submit job

JobPipelineStatusProgress

nf-rnaseq-2406rnaseqRUNNING64%

nf-chipseq-0619chipseqSUCCEEDED100%

nf-sarek-0618sarekRUNNABLE—

AI Assistant

Submit an RNA-seq analysis for me

Created job nf-rnaseq-2406, now queued to run

MultiQC report

Visual submission
Real-time monitoring
Online results
AI-driven

Why not DIY

The open engine lays the foundation; GeniOmics makes it turnkey

Running Nextflow yourself

Build and operate compute clusters
Hand-write executors & resource configs
Wire up monitoring and logs yourself
Command-line only, steep barrier
Scattered, hard-to-reproduce results

With GeniOmics

Elastic compute, zero ops
One-click standard pipelines
Real-time monitoring, auto-retry
Visual UI + AI assistant, zero code
Unified archiving, full traceability

Day-to-day

See how GeniOmics improves your every day

Smooth out the friction in the analysis workflow so your team can focus on the science.

Accelerate with AI

Generate and validate pipelines with the AI assistant — from idea to result, faster.

Automate environments

Wave builds container images automatically — no more environment wrangling.

Real-time monitoring

Job status, logs, and resources in real time, with automatic retries.

Unified data management

Centralized samples and results, direct object-storage access, traceable.

Standardize at scale

nf-core standard pipelines, scaling to 256 vCPU in parallel.

Full traceability

Parameters, versions, and results fully logged for research rigor.

Zero-code operation

Visual interface plus plain language — researchers run it on their own.

Custom pipelines

Define tools and pipelines visually, with Nextflow DSL2 generated for you.

Deployment

Flexible deployment options

From a fast start to full data sovereignty — choose the form that fits you.

Cloud SaaS

Turnkey and ops-free — ideal for a fast start and small-to-mid teams.

Start in minutes
Usage-based billing
Automatic updates

Private / VPC

Deploy into your own cloud account or VPC — data never leaves your domain.

Full data sovereignty
VPC / private network
SSO & access control

Research-grade

Enhanced capabilities for research collaboration and compliant logging.

Full traceability
Dedicated compute quota
Dedicated support / SLA

Nextflow powers the science. GeniOmics makes it turnkey.

Ready to put your data to work?

Book a demo and see how GeniOmics turns your sequencing data into reusable scientific assets.